Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| succinate dehydrogenase flavoprotein subunit | BJD13_RS05310 | Not Available | Positive | 837355 - 839145 | 65274.5 |
| hypothetical protein | BJD13_RS05315 | Not Available | Positive | 839155 - 839358 | 7138.71 |
| succinate dehydrogenase iron-sulfur subunit | BJD13_RS05320 | Not Available | Positive | 839375 - 840157 | 29397.5 |
| succinate dehydrogenase assembly factor 2 | BJD13_RS05325 | Not Available | Positive | 840269 - 840517 | 9716.69 |
| hypothetical protein | BJD13_RS05330 | Not Available | Positive | 840468 - 840920 | 16815.7 |
| lipoprotein-releasing abc transporter permease subunit | BJD13_RS05335 | Not Available | Positive | 840944 - 842185 | 44989.8 |
| lipoprotein-releasing abc transporter atp-binding protein lold | BJD13_RS05340 | Not Available | Positive | 842178 - 842912 | 26059.5 |
| sdr family oxidoreductase | BJD13_RS05345 | Not Available | Negative | 843123 - 844187 | 39429.8 |
| dna internalization-related competence protein comec/rec2 | BJD13_RS05350 | Not Available | Positive | 844482 - 847028 | 90468.1 |
| mota/tolq/exbb proton channel family protein | BJD13_RS05355 | Not Available | Positive | 846919 - 847581 | 23394.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
