Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | BJD13_RS05260 | Not Available | Negative | 827853 - 828512 | 22761.0 |
| phosphogluconate dehydratase | BJD13_RS05265 | Not Available | Negative | 828565 - 830481 | 67413.5 |
| 6-phosphogluconolactonase | BJD13_RS05270 | Not Available | Negative | 830613 - 831332 | 25936.0 |
| glucokinase | BJD13_RS05275 | Not Available | Negative | 831329 - 832336 | 35519.6 |
| glucose-6-phosphate dehydrogenase | BJD13_RS05280 | Not Available | Negative | 832333 - 833763 | 52859.1 |
| abc transporter atp-binding protein | BJD13_RS05285 | Not Available | Positive | 834183 - 835271 | 39222.9 |
| ygfz/gcvt domain-containing protein | BJD13_RS05290 | Not Available | Negative | 835404 - 836276 | 31011.3 |
| duf1674 domain-containing protein | BJD13_RS25360 | Not Available | Positive | 836316 - 836486 | 6257.21 |
| succinate dehydrogenase, cytochrome b556 subunit | BJD13_RS05300 | Not Available | Positive | 836543 - 836938 | 14660.1 |
| succinate dehydrogenase, hydrophobic membrane anchor protein | BJD13_RS05305 | Not Available | Positive | 836935 - 837321 | 13739.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
