Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BJD13_RS05205 | Not Available | Positive | 817010 - 817186 | 6429.26 |
| Trna-glu | Not Available | Not Available | Positive | 817484 - 817559 | Not Available |
| Trna-ala | Not Available | Not Available | Positive | 817607 - 817682 | Not Available |
| Trna-glu | Not Available | Not Available | Positive | 818296 - 818371 | Not Available |
| Trna-ala | Not Available | Not Available | Positive | 818419 - 818494 | Not Available |
| c-type cytochrome | BJD13_RS05230 | Not Available | Negative | 818586 - 819047 | 15672.2 |
| c-type cytochrome | BJD13_RS05235 | Not Available | Negative | 819056 - 819448 | 13532.1 |
| efflux rnd transporter periplasmic adaptor subunit | BJD13_RS05240 | Not Available | Positive | 819653 - 820786 | 39781.7 |
| efflux rnd transporter permease subunit | BJD13_RS05245 | Not Available | Positive | 820783 - 824292 | 124836.0 |
| efflux rnd transporter permease subunit | BJD13_RS05250 | Not Available | Positive | 824289 - 827375 | 112766.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
