Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| class iii poly(r)-hydroxyalkanoic acid synthase subunit phae | BJD13_RS05155 | Not Available | Positive | 805093 - 806322 | 44196.6 |
| class iii poly(r)-hydroxyalkanoic acid synthase subunit phac | BJD13_RS05160 | Not Available | Positive | 806319 - 807395 | 40264.4 |
| pspc domain-containing protein | BJD13_RS05165 | Not Available | Positive | 807511 - 807708 | 7097.87 |
| hypothetical protein | BJD13_RS05170 | Not Available | Positive | 807717 - 808193 | 17275.0 |
| nad(p)/fad-dependent oxidoreductase | BJD13_RS05175 | Not Available | Negative | 808151 - 809362 | 44713.2 |
| hypothetical protein | BJD13_RS05180 | Not Available | Positive | 809555 - 809782 | 8197.99 |
| tex family protein | BJD13_RS05185 | Not Available | Positive | 809885 - 812248 | 85118.6 |
| pas domain s-box protein | BJD13_RS05190 | Not Available | Negative | 812429 - 815830 | 124146.0 |
| response regulator | BJD13_RS05195 | Not Available | Negative | 816033 - 816413 | 13305.3 |
| Trna-leu | Not Available | Not Available | Positive | 816552 - 816638 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
