Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| manganese-binding transcriptional regulator mntr | BJD13_RS05105 | Not Available | Positive | 795726 - 796193 | 16930.3 |
| trna adenosine(34) deaminase tada | BJD13_RS05110 | Not Available | Positive | 796190 - 796705 | 18607.4 |
| oligoribonuclease | BJD13_RS05115 | Not Available | Positive | 796777 - 797361 | 21789.6 |
| mechanosensitive ion channel family protein | BJD13_RS05120 | Not Available | Negative | 797582 - 798574 | 35361.1 |
| phosphoenolpyruvate synthase | BJD13_RS05125 | Not Available | Negative | 798574 - 800952 | 85952.8 |
| pyruvate, water dikinase regulatory protein | BJD13_RS05130 | Not Available | Positive | 801095 - 801916 | 30855.8 |
| duf1249 domain-containing protein | BJD13_RS05135 | Not Available | Positive | 802105 - 802614 | 19185.1 |
| nudix hydrolase | BJD13_RS05140 | Not Available | Positive | 802685 - 803173 | 18436.0 |
| 3-hydroxybutyrate dehydrogenase | BJD13_RS05145 | Not Available | Negative | 803533 - 804291 | 26345.8 |
| cdp-alcohol phosphatidyltransferase family protein | BJD13_RS05150 | Not Available | Positive | 804376 - 805038 | 24258.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
