Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sensor histidine kinase | BJD13_RS05055 | Not Available | Negative | 783160 - 786252 | 113048.0 |
| helix-turn-helix domain-containing protein | BJD13_RS05060 | Not Available | Positive | 786770 - 787192 | 15742.8 |
| hydrolase | BJD13_RS05065 | Not Available | Positive | 787189 - 787845 | 23330.0 |
| doxx family protein | BJD13_RS05070 | Not Available | Positive | 787842 - 788276 | 15042.0 |
| amidohydrolase | BJD13_RS05075 | Not Available | Positive | 788390 - 790237 | 67383.4 |
| mfs transporter | BJD13_RS05080 | Not Available | Positive | 790332 - 791960 | 57330.2 |
| duf1427 family protein | BJD13_RS05085 | Not Available | Positive | 791965 - 792195 | 7770.54 |
| xapx domain-containing protein | BJD13_RS05090 | Not Available | Positive | 792192 - 792350 | 5395.11 |
| alpha/beta fold hydrolase | BJD13_RS05095 | Not Available | Negative | 792655 - 793479 | 29965.5 |
| nramp family divalent metal transporter | BJD13_RS05100 | Not Available | Negative | 794250 - 795584 | 47044.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
