Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamine-hydrolyzing gmp synthase | BJD13_RS04955 | Not Available | Positive | 761800 - 763365 | 57102.6 |
| zinc-binding dehydrogenase | BJD13_RS04960 | Not Available | Negative | 763527 - 764498 | 34977.3 |
| dna-3-methyladenine glycosylase i | BJD13_RS04965 | Not Available | Negative | 764649 - 765164 | 19397.4 |
| sdr family oxidoreductase | BJD13_RS04970 | Not Available | Negative | 765327 - 766112 | 26985.4 |
| nuclear transport factor 2 family protein | BJD13_RS04975 | Not Available | Negative | 766103 - 766438 | 12524.9 |
| lysr family transcriptional regulator | BJD13_RS04980 | Not Available | Positive | 766535 - 767440 | 33012.1 |
| aldo/keto reductase | BJD13_RS04985 | Not Available | Negative | 767603 - 768139 | 19333.0 |
| aldo/keto reductase | BJD13_RS25355 | Not Available | Negative | 768136 - 768339 | 6874.07 |
| ybcc family protein | BJD13_RS04995 | Not Available | Negative | 768937 - 771375 | 86428.2 |
| proton-conducting transporter membrane subunit | BJD13_RS05000 | Not Available | Negative | 771403 - 772974 | 54452.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
