Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| integration host factor subunit beta | BJD13_RS04905 | Not Available | Positive | 750813 - 751124 | 11401.8 |
| lapa family protein | BJD13_RS04910 | Not Available | Positive | 751191 - 751496 | 10550.5 |
| lipopolysaccharide assembly protein lapb | BJD13_RS04915 | Not Available | Positive | 751503 - 752681 | 44087.6 |
| mray family glycosyltransferase | BJD13_RS04920 | Not Available | Positive | 752681 - 753649 | 34834.6 |
| polysaccharide biosynthesis protein | BJD13_RS04925 | Not Available | Positive | 753663 - 755570 | 70260.8 |
| utp--glucose-1-phosphate uridylyltransferase galu | BJD13_RS04930 | Not Available | Positive | 755570 - 756463 | 32075.6 |
| monovalent cation:proton antiporter-2 (cpa2) family protein | BJD13_RS04935 | Not Available | Positive | 756637 - 758487 | 65347.7 |
| duf1244 domain-containing protein | BJD13_RS04940 | Not Available | Negative | 758758 - 759078 | 12005.0 |
| bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase fold | BJD13_RS04945 | Not Available | Positive | 759128 - 760039 | 31559.2 |
| imp dehydrogenase | BJD13_RS04950 | Not Available | Positive | 760221 - 761678 | 51675.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
