Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| discoidin domain-containing protein | BJD13_RS04855 | Not Available | Positive | 738941 - 742078 | 115875.0 |
| endonuclease/exonuclease/phosphatase family protein | BJD13_RS04860 | Not Available | Positive | 742141 - 743034 | 33081.2 |
| trab/gumn family protein | BJD13_RS04865 | Not Available | Negative | 743256 - 744476 | 43940.5 |
| gnat family n-acetyltransferase | BJD13_RS04870 | Not Available | Negative | 744469 - 745008 | 19421.1 |
| carbon-nitrogen hydrolase | BJD13_RS04875 | Not Available | Negative | 745012 - 745896 | 32720.9 |
| agmatine/peptidylarginine deiminase | BJD13_RS04880 | Not Available | Negative | 746022 - 747056 | 38012.0 |
| hypothetical protein | BJD13_RS04885 | Not Available | Negative | 747293 - 747634 | 12525.3 |
| type b 50s ribosomal protein l36 | BJD13_RS04890 | Not Available | Negative | 747875 - 748000 | 4872.19 |
| (d)cmp kinase | BJD13_RS04895 | Not Available | Positive | 748173 - 748856 | 24172.9 |
| 30s ribosomal protein s1 | BJD13_RS04900 | Not Available | Positive | 749039 - 750724 | 61742.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
