Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| smc-scp complex subunit scpb | BJD13_RS04805 | Not Available | Negative | 726619 - 727755 | 40400.6 |
| segregation and condensation protein a | BJD13_RS04810 | Not Available | Negative | 727769 - 728797 | 38234.3 |
| ycii family protein | BJD13_RS04815 | Not Available | Positive | 729026 - 729325 | 10652.6 |
| bola family protein | BJD13_RS04820 | Not Available | Positive | 729322 - 729591 | 9371.17 |
| laci family dna-binding transcriptional regulator | BJD13_RS04825 | Not Available | Positive | 729969 - 730991 | 36145.2 |
| tonb-dependent receptor | BJD13_RS04830 | Not Available | Positive | 731125 - 734103 | 108817.0 |
| glucoamylase family protein | BJD13_RS04835 | Not Available | Positive | 734207 - 735826 | 61550.5 |
| sugar abc transporter substrate-binding protein | BJD13_RS04840 | Not Available | Positive | 735830 - 737200 | 50817.6 |
| carbohydrate abc transporter permease | BJD13_RS04845 | Not Available | Positive | 737197 - 738081 | 32883.2 |
| carbohydrate abc transporter permease | BJD13_RS04850 | Not Available | Positive | 738078 - 738914 | 30602.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
