Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c maturation protein ccme | BJD13_RS04755 | Not Available | Negative | 718053 - 718523 | 17029.6 |
| heme exporter protein ccmd | BJD13_RS04760 | Not Available | Negative | 718520 - 718690 | 6571.22 |
| heme abc transporter permease ccmc | BJD13_RS04765 | Not Available | Negative | 718687 - 719439 | 28099.9 |
| heme exporter protein ccmb | BJD13_RS04770 | Not Available | Negative | 719534 - 720229 | 23952.3 |
| heme abc exporter atp-binding protein ccma | BJD13_RS04775 | Not Available | Negative | 720226 - 720870 | 22909.0 |
| pyridoxal phosphate-dependent aminotransferase | BJD13_RS04780 | Not Available | Positive | 721097 - 722245 | 42044.4 |
| amidohydrolase | BJD13_RS04785 | Not Available | Positive | 722386 - 723186 | 30051.6 |
| glutaminyl-peptide cyclotransferase | BJD13_RS04790 | Not Available | Negative | 723273 - 724043 | 28529.0 |
| hypothetical protein | BJD13_RS04795 | Not Available | Positive | 724207 - 724644 | 14552.5 |
| pseudouridine synthase | BJD13_RS04800 | Not Available | Negative | 724986 - 726626 | 57375.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
