Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acetyl-gamma-glutamyl-phosphate reductase | BJD13_RS04655 | Not Available | Positive | 693637 - 694587 | 34082.9 |
| argininosuccinate lyase | BJD13_RS04660 | Not Available | Positive | 694663 - 695961 | 46385.3 |
| ycii family protein | BJD13_RS04665 | Not Available | Positive | 695958 - 696218 | 9409.29 |
| glutamate 5-kinase | BJD13_RS04670 | Not Available | Positive | 696232 - 697386 | 40355.4 |
| glutamate-5-semialdehyde dehydrogenase | BJD13_RS04675 | Not Available | Positive | 697547 - 698791 | 44123.4 |
| glycosyl hydrolase family 95 catalytic domain-containing protein | BJD13_RS04680 | Not Available | Negative | 698892 - 701303 | 87822.9 |
| coce/nond family hydrolase | BJD13_RS04685 | Not Available | Positive | 701627 - 703540 | 71004.1 |
| cynx/nimt family mfs transporter | BJD13_RS04690 | Not Available | Negative | 703521 - 704786 | 43787.8 |
| Trna-pro | Not Available | Not Available | Positive | 704870 - 704946 | Not Available |
| cytochrome bd-i oxidase subunit cydx | BJD13_RS04700 | Not Available | Negative | 705006 - 705116 | 4079.91 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
