Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BJD13_RS04555 | Not Available | Positive | 674372 - 674662 | 10498.3 |
| ethanolamine ammonia-lyase subunit eutc | BJD13_RS04560 | Not Available | Negative | 674717 - 675532 | 28928.6 |
| ethanolamine ammonia-lyase subunit eutb | BJD13_RS04565 | Not Available | Negative | 675529 - 676938 | 50072.9 |
| ethanolamine permease | BJD13_RS04570 | Not Available | Negative | 676935 - 678299 | 48313.4 |
| voc family protein | BJD13_RS04580 | Not Available | Negative | 678717 - 679217 | 17397.7 |
| m23 family metallopeptidase | BJD13_RS04585 | Not Available | Negative | 679336 - 680178 | 29355.2 |
| dihydroorotase | BJD13_RS04590 | Not Available | Negative | 680178 - 681527 | 49068.4 |
| membrane protein insertion efficiency factor yidd | BJD13_RS04595 | Not Available | Negative | 681524 - 681817 | 10557.0 |
| hypothetical protein | BJD13_RS25345 | Not Available | Negative | 681817 - 682464 | 20030.7 |
| rna polymerase-binding protein dksa | BJD13_RS25350 | Not Available | Positive | 682637 - 682942 | 11792.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
