Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ef-p beta-lysylation protein epmb | BJD13_RS04500 | Not Available | Negative | 664558 - 665586 | 37022.8 |
| elongation factor p | BJD13_RS04505 | Not Available | Positive | 665689 - 666255 | 20894.8 |
| hypothetical protein | BJD13_RS04510 | Not Available | Positive | 666450 - 667241 | 27890.8 |
| trz/atz family hydrolase | BJD13_RS04515 | Not Available | Positive | 667259 - 668596 | 48189.7 |
| bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-o-methyltransferase ubig | BJD13_RS04520 | Not Available | Positive | 668627 - 669346 | 26103.3 |
| phosphoglycolate phosphatase | BJD13_RS04525 | Not Available | Positive | 669432 - 670124 | 24812.0 |
| phytoene synthase | BJD13_RS04530 | Not Available | Positive | 670153 - 670842 | 25694.6 |
| putative acyl-coa thioester hydrolase | BJD13_RS04535 | Not Available | Negative | 671173 - 672354 | 40549.8 |
| pyridoxamine 5'-phosphate oxidase family protein | BJD13_RS04545 | Not Available | Positive | 672774 - 673277 | 18361.9 |
| mbl fold metallo-hydrolase | BJD13_RS04550 | Not Available | Positive | 673397 - 674278 | 33175.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
