Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| adenine phosphoribosyltransferase | BJD13_RS04450 | Not Available | Positive | 653396 - 653956 | 20090.3 |
| atp-dependent rna helicase dbpa | BJD13_RS04455 | Not Available | Negative | 654058 - 655434 | 49189.6 |
| atp-binding cassette domain-containing protein | BJD13_RS04460 | Not Available | Positive | 655545 - 657434 | 69835.1 |
| barstar family protein | BJD13_RS04465 | Not Available | Negative | 657725 - 658150 | 15070.7 |
| ribonuclease domain-containing protein | BJD13_RS04470 | Not Available | Negative | 658147 - 658587 | 16106.2 |
| superoxide dismutase | BJD13_RS04475 | Not Available | Positive | 658839 - 659450 | 22718.5 |
| inositol monophosphatase family protein | BJD13_RS04480 | Not Available | Negative | 659648 - 660481 | 30052.1 |
| rna methyltransferase | BJD13_RS04485 | Not Available | Positive | 660599 - 661363 | 27156.8 |
| phosphate/phosphite/phosphonate abc transporter substrate-binding protein | BJD13_RS04490 | Not Available | Positive | 661415 - 662344 | 34093.5 |
| putative bifunctional diguanylate cyclase/phosphodiesterase | BJD13_RS04495 | Not Available | Positive | 662341 - 664458 | 76832.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
