Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-ketoacyl-acp reductase | BJD13_RS04400 | Not Available | Negative | 641932 - 642672 | 26653.7 |
| trna glutamyl-q(34) synthetase gluqrs | BJD13_RS04405 | Not Available | Negative | 642755 - 643654 | 32570.9 |
| protease htpx | BJD13_RS04410 | Not Available | Positive | 643752 - 644630 | 31147.4 |
| eal domain-containing protein | BJD13_RS04415 | Not Available | Negative | 644730 - 646799 | 75985.6 |
| nad(p)/fad-dependent oxidoreductase | BJD13_RS04420 | Not Available | Negative | 647016 - 648197 | 42132.7 |
| yaeq family protein | BJD13_RS04425 | Not Available | Negative | 648194 - 648742 | 20635.4 |
| cold-shock protein | BJD13_RS04430 | Not Available | Positive | 649295 - 649504 | 7549.95 |
| glutathione s-transferase family protein | BJD13_RS04435 | Not Available | Positive | 649676 - 650374 | 25920.6 |
| alpha/beta hydrolase | BJD13_RS04440 | Not Available | Negative | 650588 - 651463 | 31565.9 |
| protein adenylyltransferase selo | BJD13_RS04445 | Not Available | Positive | 651745 - 653301 | 57758.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
