Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| exodeoxyribonuclease vii large subunit | BJD13_RS04350 | Not Available | Negative | 630745 - 632082 | 49251.2 |
| trna epoxyqueuosine(34) reductase queg | BJD13_RS04355 | Not Available | Negative | 632206 - 633273 | 39962.7 |
| bifunctional adp-dependent nad(p)h-hydrate dehydratase/nad(p)h-hydrate epimerase | BJD13_RS04360 | Not Available | Positive | 633298 - 634785 | 50558.6 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex atpase subunit type 1 tsae | BJD13_RS04365 | Not Available | Positive | 634782 - 635282 | 17795.3 |
| n-acetylmuramoyl-l-alanine amidase | BJD13_RS04370 | Not Available | Positive | 635353 - 637053 | 56886.7 |
| dna mismatch repair endonuclease mutl | BJD13_RS04375 | Not Available | Positive | 637192 - 639069 | 67662.1 |
| duf1684 domain-containing protein | BJD13_RS04380 | Not Available | Positive | 639069 - 640004 | 33697.2 |
| trab/gumn family protein | BJD13_RS04385 | Not Available | Positive | 640038 - 641012 | 35607.6 |
| Ncrna_class:other | Not Available | Not Available | Positive | 641066 - 641140 | Not Available |
| polyhydroxyalkanoate synthesis repressor phar | BJD13_RS04395 | Not Available | Negative | 641197 - 641772 | 21126.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
