Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BJD13_RS24550 | Not Available | Negative | 621372 - 621548 | 6453.16 |
| Trna-ala | Not Available | Not Available | Positive | 621698 - 621773 | Not Available |
| h-ns family nucleoid-associated regulatory protein | BJD13_RS04305 | Not Available | Negative | 621866 - 622267 | 14822.4 |
| duf3606 domain-containing protein | BJD13_RS04310 | Not Available | Positive | 622487 - 622663 | 6487.65 |
| dna ligase d | BJD13_RS04315 | Not Available | Positive | 622678 - 625296 | 96029.9 |
| ribonuclease d | BJD13_RS04320 | Not Available | Negative | 625498 - 626589 | 40945.2 |
| Ncrna_class:other | Not Available | Not Available | Positive | 626797 - 626872 | Not Available |
| formylglycine-generating enzyme family protein | BJD13_RS04335 | Not Available | Positive | 626948 - 628693 | 63228.5 |
| hypothetical protein | BJD13_RS04340 | Not Available | Positive | 628875 - 629135 | 9453.04 |
| virulence factor | BJD13_RS04345 | Not Available | Positive | 629190 - 630452 | 44968.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
