Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BJD13_RS20030 | Not Available | Negative | 4102922 - 4103215 | 10243.2 |
| Putative phage tail fiber protein | BJD13_RS20035 | Not Available | Negative | 4103293 - 4105092 | 62257.7 |
| Baseplate assembly protein | BJD13_RS20040 | Not Available | Negative | 4105105 - 4105650 | 20255.2 |
| Baseplate assembly protein | BJD13_RS20045 | Not Available | Negative | 4105643 - 4106533 | 32019.1 |
| type iii secretion system yopj family effector avrxv4 | BJD13_RS20050 | Not Available | Positive | 4106951 - 4108030 | 39745.3 |
| Tail completion protein | BJD13_RS20055 | Not Available | Negative | 4108038 - 4108487 | 16882.7 |
| Predicted tail completion | BJD13_RS20060 | Not Available | Negative | 4108475 - 4108894 | 15170.2 |
| Gp32 | BJD13_RS20065 | Not Available | Negative | 4108891 - 4109379 | 16879.0 |
| Phage lytic enzyme | BJD13_RS20070 | Not Available | Negative | 4109379 - 4110017 | 23270.8 |
| Phage-encoded membrane protein | BJD13_RS20075 | Not Available | Negative | 4110017 - 4110292 | 9884.44 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
