Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutathione s-transferase n-terminal domain-containing protein | BJD13_RS04250 | Not Available | Positive | 609916 - 610551 | 23885.1 |
| clpxp protease specificity-enhancing factor | BJD13_RS04255 | Not Available | Positive | 610630 - 611070 | 15423.5 |
| hypothetical protein | BJD13_RS04260 | Not Available | Positive | 611261 - 611593 | 12559.7 |
| duf3301 domain-containing protein | BJD13_RS04265 | Not Available | Negative | 611786 - 612166 | 14066.8 |
| Ncrna_class:other | Not Available | Not Available | Positive | 612243 - 612319 | Not Available |
| dead/deah box helicase | BJD13_RS04275 | Not Available | Positive | 612509 - 616903 | 160174.0 |
| dna-3-methyladenine glycosylase | BJD13_RS04280 | Not Available | Negative | 616843 - 617463 | 21915.4 |
| methyl-accepting chemotaxis protein | BJD13_RS04285 | Not Available | Positive | 617761 - 619419 | 58488.9 |
| chemotaxis protein chew | BJD13_RS04290 | Not Available | Positive | 619431 - 619940 | 17986.8 |
| sensor domain-containing diguanylate cyclase | BJD13_RS04295 | Not Available | Negative | 619983 - 621089 | 39520.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
