Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rrna maturation rnase ybey | BJD13_RS04195 | Not Available | Negative | 599426 - 599911 | 17566.1 |
| hypothetical protein | BJD13_RS04200 | Not Available | Negative | 600011 - 600556 | 19090.9 |
| phoh family protein | BJD13_RS04205 | Not Available | Negative | 600559 - 601542 | 35998.2 |
| trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miab | BJD13_RS04210 | Not Available | Negative | 601966 - 603420 | 52624.8 |
| glutathione s-transferase family protein | BJD13_RS04215 | Not Available | Negative | 603459 - 604103 | 22921.3 |
| helix-turn-helix transcriptional regulator | BJD13_RS04220 | Not Available | Positive | 604207 - 605172 | 34497.9 |
| lytic transglycosylase domain-containing protein | BJD13_RS04225 | Not Available | Positive | 605363 - 606346 | 34462.1 |
| ubiquinol-cytochrome c reductase iron-sulfur subunit | BJD13_RS04235 | Not Available | Positive | 606852 - 607496 | 23138.6 |
| cytochrome b | BJD13_RS04240 | Not Available | Positive | 607496 - 608755 | 47570.9 |
| cytochrome c1 | BJD13_RS04245 | Not Available | Positive | 608748 - 609506 | 27911.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
