Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux transporter outer membrane subunit | BJD13_RS04145 | Not Available | Positive | 589280 - 590770 | 53085.1 |
| abc transporter atp-binding protein | BJD13_RS04150 | Not Available | Positive | 590884 - 592017 | 40943.4 |
| Ncrna_class:other | Not Available | Not Available | Positive | 592079 - 592154 | Not Available |
| abc transporter permease subunit | BJD13_RS04160 | Not Available | Positive | 592146 - 593057 | 33366.2 |
| abc transporter permease subunit | BJD13_RS04165 | Not Available | Positive | 593054 - 593902 | 30320.1 |
| nad-dependent succinate-semialdehyde dehydrogenase | BJD13_RS04170 | Not Available | Positive | 594085 - 595476 | 49739.1 |
| magnesium and cobalt transport protein cora | BJD13_RS04175 | Not Available | Negative | 595649 - 596650 | 37938.9 |
| duf4105 domain-containing protein | BJD13_RS04180 | Not Available | Negative | 596666 - 597937 | 46956.0 |
| hlyc/corc family transporter | BJD13_RS04185 | Not Available | Negative | 597934 - 598812 | 32146.9 |
| hypothetical protein | BJD13_RS04190 | Not Available | Negative | 598908 - 599426 | 18417.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
