Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hd-gyp domain-containing protein | BJD13_RS04040 | Not Available | Negative | 559777 - 560763 | 35707.4 |
| chase domain-containing protein | BJD13_RS04045 | Not Available | Negative | 560794 - 564888 | 150192.0 |
| duf445 domain-containing protein | BJD13_RS04050 | Not Available | Negative | 565032 - 566336 | 49116.9 |
| hypothetical protein | BJD13_RS04055 | Not Available | Negative | 566568 - 567416 | 31184.7 |
| aspartate aminotransferase family protein | BJD13_RS04060 | Not Available | Negative | 567551 - 568915 | 48847.8 |
| ofa family mfs transporter | BJD13_RS04070 | Not Available | Positive | 569431 - 571110 | 59372.9 |
| formate dehydrogenase accessory sulfurtransferase fdhd | BJD13_RS04075 | Not Available | Positive | 571117 - 571962 | 29652.6 |
| fdhf/ydep family oxidoreductase | BJD13_RS04080 | Not Available | Positive | 571959 - 574307 | 86001.9 |
| hypothetical protein | BJD13_RS04085 | Not Available | Positive | 574297 - 574575 | 9821.83 |
| mfs transporter | BJD13_RS04090 | Not Available | Positive | 574963 - 576243 | 45079.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
