Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate porin | BJD13_RS03990 | Not Available | Negative | 538869 - 540146 | 46211.5 |
| pts fructose transporter subunit iic | BJD13_RS03995 | Not Available | Negative | 540318 - 542060 | 58657.0 |
| 1-phosphofructokinase | BJD13_RS04000 | Not Available | Negative | 542214 - 543170 | 33110.0 |
| phosphoenolpyruvate--protein phosphotransferase | BJD13_RS04005 | Not Available | Negative | 543167 - 545683 | 88415.5 |
| laci family dna-binding transcriptional regulator | BJD13_RS04010 | Not Available | Positive | 545845 - 546843 | 36003.5 |
| multidrug efflux rnd transporter permease subunit | BJD13_RS04015 | Not Available | Negative | 547188 - 550358 | 113571.0 |
| efflux rnd transporter periplasmic adaptor subunit | BJD13_RS04020 | Not Available | Negative | 550371 - 551678 | 45005.1 |
| tetr/acrr family transcriptional regulator | BJD13_RS04025 | Not Available | Negative | 551693 - 552352 | 24496.3 |
| nad-glutamate dehydrogenase | BJD13_RS04030 | Not Available | Positive | 552631 - 557640 | 186088.0 |
| dha2 family efflux mfs transporter permease subunit | BJD13_RS04035 | Not Available | Negative | 557870 - 559297 | 50998.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
