Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein translocase subunit secf | BJD13_RS03945 | Not Available | Positive | 527912 - 528880 | 35308.4 |
| duf4238 domain-containing protein | BJD13_RS03950 | Not Available | Positive | 529562 - 530395 | 31874.0 |
| hypothetical protein | BJD13_RS03955 | Not Available | Positive | 530479 - 531024 | 19826.2 |
| duf4145 domain-containing protein | BJD13_RS03960 | Not Available | Positive | 531095 - 531703 | 22040.7 |
| nfed family protein | BJD13_RS25340 | Not Available | Positive | 531772 - 531942 | 6563.07 |
| duf1629 domain-containing protein | BJD13_RS03970 | Not Available | Positive | 532308 - 532904 | 21719.4 |
| hypothetical protein | BJD13_RS25555 | Not Available | Positive | 532938 - 533063 | 4899.66 |
| duf1629 domain-containing protein | BJD13_RS03975 | Not Available | Positive | 533262 - 533900 | 23175.3 |
| hypothetical protein | BJD13_RS03980 | Not Available | Positive | 533936 - 537943 | 142954.0 |
| hypothetical protein | BJD13_RS03985 | Not Available | Positive | 537984 - 538634 | 23838.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
