Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | BJD13_RS03895 | Not Available | Positive | 514308 - 516866 | 93721.2 |
| phytase | BJD13_RS03900 | Not Available | Positive | 516863 - 517984 | 40562.0 |
| fn3 domain-containing metallophosphoesterase family protein | BJD13_RS03905 | Not Available | Positive | 517981 - 519360 | 50329.8 |
| glycosyltransferase family 32 protein | BJD13_RS03910 | Not Available | Positive | 519730 - 520437 | 27092.5 |
| aminotransferase class iii-fold pyridoxal phosphate-dependent enzyme | BJD13_RS03915 | Not Available | Negative | 520789 - 522285 | 53495.8 |
| lrp/asnc family transcriptional regulator | BJD13_RS03920 | Not Available | Positive | 522408 - 522839 | 15735.2 |
| trna preq1(34) s-adenosylmethionine ribosyltransferase-isomerase quea | BJD13_RS03925 | Not Available | Positive | 523005 - 524075 | 39516.7 |
| trna guanosine(34) transglycosylase tgt | BJD13_RS03930 | Not Available | Positive | 524157 - 525302 | 42115.3 |
| preprotein translocase subunit yajc | BJD13_RS03935 | Not Available | Positive | 525434 - 525787 | 12278.3 |
| protein translocase subunit secd | BJD13_RS03940 | Not Available | Positive | 525978 - 527822 | 65902.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
