Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BJD13_RS24540 | Not Available | Positive | 503573 - 504901 | 47208.2 |
| molecular chaperone htpg | BJD13_RS03850 | Not Available | Negative | 504992 - 506896 | 70802.7 |
| 16s rrna (guanine(966)-n(2))-methyltransferase rsmd | BJD13_RS03855 | Not Available | Positive | 507071 - 507760 | 24763.9 |
| pantetheine-phosphate adenylyltransferase | BJD13_RS03860 | Not Available | Positive | 507757 - 508263 | 18301.0 |
| hypothetical protein | BJD13_RS03865 | Not Available | Positive | 508310 - 508807 | 17405.8 |
| hypothetical protein | BJD13_RS03870 | Not Available | Positive | 508866 - 509048 | 6622.29 |
| yfhl family 4fe-4s dicluster ferredoxin | BJD13_RS03875 | Not Available | Positive | 509039 - 509323 | 10418.5 |
| gamma-glutamyltransferase | BJD13_RS03880 | Not Available | Positive | 509320 - 511098 | 62714.7 |
| glycoside hydrolase family 9 protein | BJD13_RS03885 | Not Available | Positive | 511388 - 513148 | 63913.6 |
| uracil phosphoribosyltransferase | BJD13_RS03890 | Not Available | Negative | 513524 - 514156 | 22622.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
