Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BJD13_RS03795 | Not Available | Positive | 479541 - 479837 | 9865.49 |
| protease pro-enzyme activation domain-containing protein | BJD13_RS03800 | Not Available | Negative | 480124 - 481695 | 54910.9 |
| hypothetical protein | BJD13_RS03810 | Not Available | Positive | 482174 - 484531 | 86594.9 |
| tonb-dependent receptor domain-containing protein | BJD13_RS03815 | Not Available | Positive | 485012 - 487828 | 101476.0 |
| ig-like domain-containing protein | BJD13_RS03820 | Not Available | Positive | 488226 - 492584 | 157312.0 |
| family 43 glycosylhydrolase | BJD13_RS03825 | Not Available | Positive | 492581 - 494167 | 57870.9 |
| s9 family peptidase | BJD13_RS03830 | Not Available | Positive | 494505 - 496817 | 85619.0 |
| tonb-dependent receptor domain-containing protein | BJD13_RS03835 | Not Available | Positive | 497309 - 500203 | 103122.0 |
| glycoside hydrolase family 127 protein | BJD13_RS03840 | Not Available | Positive | 500351 - 502726 | 87478.4 |
| nfed family protein | BJD13_RS25335 | Not Available | Positive | 502983 - 503280 | 11036.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
