Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2fe-2s iron-sulfur cluster-binding protein | BJD13_RS03745 | Not Available | Positive | 464549 - 464794 | 8417.18 |
| fad/nad(p)-binding oxidoreductase | BJD13_RS03750 | Not Available | Positive | 464787 - 466100 | 45570.0 |
| dihydrodipicolinate synthase family protein | BJD13_RS03755 | Not Available | Positive | 466097 - 467005 | 31912.8 |
| aldehyde dehydrogenase (nadp(+)) | BJD13_RS03760 | Not Available | Positive | 467216 - 468832 | 54607.7 |
| m24 family metallopeptidase | BJD13_RS03765 | Not Available | Positive | 468829 - 470028 | 42976.5 |
| duf885 domain-containing protein | BJD13_RS03770 | Not Available | Positive | 470144 - 471961 | 67570.5 |
| duf885 domain-containing protein | BJD13_RS03775 | Not Available | Positive | 471958 - 473835 | 69882.4 |
| apc family permease | BJD13_RS03780 | Not Available | Positive | 473898 - 475484 | 56672.0 |
| s9 family peptidase | BJD13_RS03785 | Not Available | Positive | 475474 - 477813 | 86732.7 |
| duf5597 domain-containing protein | BJD13_RS03790 | Not Available | Positive | 477813 - 479450 | 59596.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
