Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| excinuclease cho | BJD13_RS03685 | Not Available | Negative | 453554 - 454408 | 32301.2 |
| kgg domain-containing protein | BJD13_RS03690 | Not Available | Negative | 454650 - 454850 | 6837.58 |
| fg-gap repeat domain-containing protein | BJD13_RS03695 | Not Available | Positive | 455186 - 455797 | 21788.8 |
| hybrid sensor histidine kinase/response regulator | BJD13_RS03700 | Not Available | Positive | 455928 - 457550 | 58741.2 |
| oxidative damage protection protein | BJD13_RS03710 | Not Available | Negative | 457925 - 458200 | 10479.4 |
| a/g-specific adenine glycosylase | BJD13_RS03715 | Not Available | Negative | 458224 - 459297 | 39477.7 |
| signal recognition particle-docking protein ftsy | BJD13_RS03725 | Not Available | Negative | 459635 - 461254 | 54800.6 |
| arac family transcriptional regulator | BJD13_RS03730 | Not Available | Negative | 461460 - 462176 | 27014.9 |
| proline racemase family protein | BJD13_RS03735 | Not Available | Positive | 462337 - 463275 | 32893.9 |
| nad(p)/fad-dependent oxidoreductase | BJD13_RS03740 | Not Available | Positive | 463392 - 464552 | 40249.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
