Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase | BJD13_RS03635 | Not Available | Positive | 443347 - 444501 | 42033.2 |
| hypothetical protein | BJD13_RS03640 | Not Available | Positive | 444479 - 445090 | 22296.9 |
| glycosyltransferase | BJD13_RS03645 | Not Available | Positive | 445080 - 446336 | 45772.7 |
| 1-deoxy-d-xylulose-5-phosphate synthase | BJD13_RS03650 | Not Available | Negative | 446371 - 448287 | 68465.5 |
| hnh endonuclease | BJD13_RS03655 | Not Available | Negative | 448719 - 449375 | 24170.1 |
| acyl-coa dehydrogenase c-terminal domain-containing protein | BJD13_RS03660 | Not Available | Negative | 449662 - 451455 | 64835.2 |
| lea type 2 family protein | BJD13_RS03665 | Not Available | Negative | 451493 - 451969 | 16829.3 |
| lipocalin family protein | BJD13_RS03670 | Not Available | Negative | 452084 - 452620 | 19992.2 |
| Trna-phe | Not Available | Not Available | Positive | 452803 - 452878 | Not Available |
| hypothetical protein | BJD13_RS03680 | Not Available | Positive | 453126 - 453401 | 10176.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
