Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| integration host factor subunit alpha | BJD13_RS03535 | Not Available | Positive | 423459 - 423758 | 11214.4 |
| merr family transcriptional regulator | BJD13_RS03540 | Not Available | Positive | 423739 - 424095 | 13826.8 |
| Trna-pro | Not Available | Not Available | Positive | 424157 - 424233 | Not Available |
| polysaccharide biosynthesis/export family protein | BJD13_RS03550 | Not Available | Positive | 424704 - 425402 | 25408.1 |
| gumc family protein | BJD13_RS03555 | Not Available | Positive | 425384 - 426823 | 53637.3 |
| undecaprenyl-phosphate glucose phosphotransferase | BJD13_RS03560 | Not Available | Positive | 427067 - 428521 | 54562.0 |
| hypothetical protein | BJD13_RS03565 | Not Available | Positive | 428616 - 429905 | 47794.4 |
| acyltransferase family protein | BJD13_RS03570 | Not Available | Positive | 429902 - 430996 | 39707.8 |
| acyltransferase family protein | BJD13_RS03575 | Not Available | Positive | 431010 - 432098 | 39372.9 |
| glycosyltransferase family 4 protein | BJD13_RS03580 | Not Available | Positive | 432163 - 433305 | 42130.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
