Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| six-hairpin glycosidase-like protein | BJD13_RS03485 | Not Available | Positive | 409462 - 411648 | 79897.9 |
| mfs transporter | BJD13_RS03490 | Not Available | Positive | 411645 - 413123 | 53321.1 |
| alpha-amylase family glycosyl hydrolase | BJD13_RS03495 | Not Available | Positive | 413171 - 414796 | 59670.1 |
| laci family dna-binding transcriptional regulator | BJD13_RS03500 | Not Available | Negative | 414921 - 416042 | 40028.4 |
| threonine--trna ligase | BJD13_RS03505 | Not Available | Positive | 416365 - 418269 | 71844.7 |
| translation initiation factor if-3 | BJD13_RS03510 | Not Available | Positive | 418333 - 418860 | 20252.7 |
| 50s ribosomal protein l35 | BJD13_RS03515 | Not Available | Positive | 419107 - 419304 | 7561.34 |
| 50s ribosomal protein l20 | BJD13_RS03520 | Not Available | Positive | 419315 - 419674 | 13355.7 |
| phenylalanine--trna ligase subunit alpha | BJD13_RS03525 | Not Available | Positive | 419937 - 420932 | 37211.2 |
| phenylalanine--trna ligase subunit beta | BJD13_RS03530 | Not Available | Positive | 421059 - 423437 | 85034.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
