Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nfed family protein | BJD13_RS03430 | Not Available | Positive | 395669 - 396741 | 38893.8 |
| duf4189 domain-containing protein | BJD13_RS03435 | Not Available | Positive | 396743 - 397231 | 16710.1 |
| fg-gap repeat protein | BJD13_RS03440 | Not Available | Positive | 397340 - 398143 | 28751.8 |
| peptidoglycan-binding protein | BJD13_RS24535 | Not Available | Positive | 398248 - 399543 | 47151.0 |
| nfed family protein | BJD13_RS03450 | Not Available | Positive | 399583 - 400197 | 21975.2 |
| is3 family transposase | BJD13_RS03455 | Not Available | Negative | 400213 - 401327 | 42940.5 |
| alpha-amylase family glycosyl hydrolase | BJD13_RS03465 | Not Available | Positive | 401800 - 403416 | 60541.3 |
| tonb-dependent receptor | BJD13_RS03470 | Not Available | Negative | 404045 - 406819 | 100586.0 |
| nfed family protein | BJD13_RS24920 | Not Available | Positive | 406808 - 407133 | 11716.7 |
| glycoside hydrolase family 97 protein | BJD13_RS03480 | Not Available | Negative | 407137 - 409218 | 77924.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
