Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hybrid sensor histidine kinase/response regulator | BJD13_RS23630 | Not Available | Positive | 4951335 - 4954862 | 127487.0 |
| two-component regulator propeller domain-containing protein | BJD13_RS23635 | Not Available | Positive | 4955067 - 4958636 | 130320.0 |
| atp-binding protein | BJD13_RS23640 | Not Available | Positive | 4959030 - 4962575 | 129993.0 |
| multidrug transporter subunit mdtd | BJD13_RS23645 | Not Available | Negative | 4962610 - 4964031 | 50251.3 |
| uroporphyrinogen decarboxylase | BJD13_RS23650 | Not Available | Negative | 4964394 - 4965458 | 38379.2 |
| wgr domain-containing protein | BJD13_RS23655 | Not Available | Negative | 4965473 - 4965727 | 9580.33 |
| 3-dehydroquinate synthase | BJD13_RS23660 | Not Available | Negative | 4966020 - 4967132 | 38823.9 |
| shikimate kinase | BJD13_RS23665 | Not Available | Negative | 4967129 - 4967671 | 19962.1 |
| pyridoxamine 5'-phosphate oxidase | BJD13_RS23670 | Not Available | Positive | 4967839 - 4968438 | 22273.1 |
| yjfi family protein | BJD13_RS23675 | Not Available | Positive | 4968618 - 4969034 | 14994.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
