Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| homoserine o-succinyltransferase metx | BJD13_RS23575 | Not Available | Positive | 4938697 - 4939728 | 36637.8 |
| o-succinylhomoserine (thiol)-lyase | BJD13_RS23580 | Not Available | Positive | 4939725 - 4940942 | 42571.8 |
| homoserine dehydrogenase | BJD13_RS23585 | Not Available | Positive | 4940939 - 4942027 | 38123.5 |
| alpha/beta fold hydrolase | BJD13_RS23595 | Not Available | Negative | 4942360 - 4943367 | 36984.7 |
| l-serine ammonia-lyase | BJD13_RS23600 | Not Available | Negative | 4943702 - 4945084 | 49703.7 |
| glutaredoxin family protein | BJD13_RS23605 | Not Available | Positive | 4945172 - 4945411 | 9131.71 |
| ycei family protein | BJD13_RS23610 | Not Available | Negative | 4945558 - 4946127 | 19830.7 |
| cytochrome b | BJD13_RS23615 | Not Available | Negative | 4946137 - 4946700 | 21239.4 |
| ycei family protein | BJD13_RS23620 | Not Available | Negative | 4946697 - 4947359 | 23354.4 |
| hybrid sensor histidine kinase/response regulator | BJD13_RS23625 | Not Available | Positive | 4947456 - 4951031 | 129472.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
