Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | BJD13_RS23525 | Not Available | Negative | 4925842 - 4928613 | 100085.0 |
| hypothetical protein | BJD13_RS23530 | Not Available | Negative | 4928856 - 4929689 | 28957.9 |
| hsp33 family molecular chaperone hslo | BJD13_RS23535 | Not Available | Negative | 4929843 - 4930733 | 31874.7 |
| monofunctional biosynthetic peptidoglycan transglycosylase | BJD13_RS23540 | Not Available | Positive | 4930808 - 4931554 | 28070.7 |
| glycosyltransferase family 2 protein | BJD13_RS23545 | Not Available | Positive | 4931551 - 4932597 | 38232.4 |
| cbs domain-containing protein | BJD13_RS23550 | Not Available | Positive | 4932557 - 4932985 | 15528.0 |
| asma family protein | BJD13_RS23555 | Not Available | Negative | 4932998 - 4934953 | 70649.7 |
| paqr family membrane homeostasis protein trha | BJD13_RS23560 | Not Available | Negative | 4935012 - 4935656 | 23271.6 |
| peptide chain release factor 3 | BJD13_RS23565 | Not Available | Negative | 4935732 - 4937336 | 59029.9 |
| m23 family metallopeptidase | BJD13_RS23570 | Not Available | Negative | 4937474 - 4938379 | 31854.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
