Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycine cleavage system aminomethyltransferase gcvt | BJD13_RS23480 | Not Available | Positive | 4913931 - 4915040 | 40399.5 |
| glycine cleavage system protein gcvh | BJD13_RS23485 | Not Available | Positive | 4915188 - 4915583 | 14102.1 |
| hypothetical protein | BJD13_RS24860 | Not Available | Negative | 4915577 - 4915786 | 7292.65 |
| hypothetical protein | BJD13_RS23490 | Not Available | Positive | 4916593 - 4917060 | 16080.9 |
| serine hydrolase domain-containing protein | BJD13_RS23495 | Not Available | Negative | 4917683 - 4919026 | 47399.6 |
| ntp/ndp exchange transporter | BJD13_RS23500 | Not Available | Positive | 4919396 - 4920757 | 49085.0 |
| duf1304 domain-containing protein | BJD13_RS23505 | Not Available | Positive | 4920937 - 4921290 | 12794.1 |
| acyl-coa dehydrogenase | BJD13_RS23510 | Not Available | Negative | 4921581 - 4924055 | 89375.0 |
| alpha/beta fold hydrolase | BJD13_RS23515 | Not Available | Negative | 4924052 - 4924975 | 32742.7 |
| tetr/acrr family transcriptional regulator | BJD13_RS23520 | Not Available | Positive | 4925112 - 4925720 | 22627.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
