Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | BJD13_RS23430 | Not Available | Negative | 4903124 - 4905796 | 96956.5 |
| glucokinase family protein | BJD13_RS23435 | Not Available | Positive | 4906517 - 4907515 | 34705.0 |
| 16s rrna (uracil(1498)-n(3))-methyltransferase | BJD13_RS23440 | Not Available | Negative | 4907817 - 4908551 | 26279.7 |
| adenosylmethionine--8-amino-7-oxononanoate transaminase | BJD13_RS23445 | Not Available | Negative | 4908542 - 4909960 | 51294.5 |
| adp compounds hydrolase nude | BJD13_RS23450 | Not Available | Positive | 4910002 - 4910550 | 20767.9 |
| 3'(2'),5'-bisphosphate nucleotidase cysq | BJD13_RS23455 | Not Available | Positive | 4910547 - 4911347 | 29355.8 |
| nucleoside triphosphate pyrophosphohydrolase | BJD13_RS23460 | Not Available | Positive | 4911541 - 4912545 | 36081.1 |
| ynfa family protein | BJD13_RS23465 | Not Available | Positive | 4912542 - 4912877 | 12046.1 |
| nfed family protein | BJD13_RS23470 | Not Available | Positive | 4913002 - 4913319 | 11027.3 |
| nfed family protein | BJD13_RS23475 | Not Available | Positive | 4913326 - 4913759 | 15651.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
