Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BJD13_RS23375 | Not Available | Negative | 4881926 - 4882126 | 7022.2 |
| type iii secretion system effector xopk | BJD13_RS23385 | Not Available | Positive | 4882624 - 4885290 | 93229.4 |
| glycoside hydrolase family 35 protein | BJD13_RS23390 | Not Available | Negative | 4885337 - 4887172 | 67463.0 |
| gh92 family glycosyl hydrolase | BJD13_RS23395 | Not Available | Negative | 4887483 - 4889825 | 85643.7 |
| glycoside hydrolase family 125 protein | BJD13_RS23400 | Not Available | Negative | 4889932 - 4891395 | 54415.5 |
| glycoside hydrolase family 3 c-terminal domain-containing protein | BJD13_RS23405 | Not Available | Negative | 4891872 - 4894541 | 95047.3 |
| beta-mannosidase | BJD13_RS23410 | Not Available | Negative | 4894750 - 4897431 | 100171.0 |
| family 20 glycosylhydrolase | BJD13_RS23415 | Not Available | Negative | 4897453 - 4899903 | 87498.0 |
| glycosyl hydrolase family 18 protein | BJD13_RS23420 | Not Available | Negative | 4900161 - 4901228 | 40867.7 |
| alpha-l-fucosidase | BJD13_RS23425 | Not Available | Negative | 4901232 - 4902917 | 62222.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
