Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chemotaxis protein chew | BJD13_RS23310 | Not Available | Positive | 4870012 - 4870488 | 16798.4 |
| gnat family n-acetyltransferase | BJD13_RS23315 | Not Available | Positive | 4870715 - 4871338 | 22924.6 |
| hypothetical protein | BJD13_RS23320 | Not Available | Negative | 4871306 - 4871776 | 16730.4 |
| sigma-70 family rna polymerase sigma factor | BJD13_RS23335 | Not Available | Negative | 4873105 - 4873677 | 21533.8 |
| vwa domain-containing protein | BJD13_RS23340 | Not Available | Negative | 4873707 - 4875515 | 64414.0 |
| n(4)-(beta-n-acetylglucosaminyl)-l-asparaginase | BJD13_RS23345 | Not Available | Positive | 4876022 - 4877086 | 37378.6 |
| copper homeostasis protein cutc | BJD13_RS23350 | Not Available | Positive | 4877083 - 4877814 | 25597.9 |
| type iii secretion system leucine-rich repeat domain-containing effector xopl | BJD13_RS23355 | Not Available | Negative | 4877916 - 4879628 | 63023.2 |
| sialidase family protein | BJD13_RS23360 | Not Available | Negative | 4879984 - 4881144 | 41836.5 |
| rebb family r body protein | BJD13_RS23370 | Not Available | Positive | 4881539 - 4881868 | 11101.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
