Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| p-type dna transfer atpase virb11 | BJD13_RS03380 | Not Available | Positive | 385862 - 386911 | 38985.6 |
| lytic transglycosylase domain-containing protein | BJD13_RS03385 | Not Available | Positive | 386974 - 387804 | 29121.7 |
| trbc/virb2 family protein | BJD13_RS03390 | Not Available | Positive | 387862 - 388272 | 14018.3 |
| type iv secretion system protein virb3 | BJD13_RS03395 | Not Available | Positive | 388265 - 388576 | 12149.4 |
| virb4 family type iv secretion/conjugal transfer atpase | BJD13_RS03400 | Not Available | Positive | 388677 - 391130 | 91161.5 |
| hypothetical protein | BJD13_RS03405 | Not Available | Positive | 391231 - 391953 | 26459.7 |
| type iv secretion system protein | BJD13_RS03410 | Not Available | Positive | 392061 - 393137 | 38155.4 |
| duf4189 domain-containing protein | BJD13_RS03415 | Not Available | Positive | 393157 - 393648 | 17339.2 |
| hypothetical protein | BJD13_RS24530 | Not Available | Positive | 393765 - 394280 | 18470.7 |
| peptidoglycan-binding protein | BJD13_RS25330 | Not Available | Positive | 394316 - 395629 | 47302.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
