Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rela/spot family protein | BJD13_RS23200 | Not Available | Positive | 4838482 - 4840668 | 80868.3 |
| hypothetical protein | BJD13_RS24850 | Not Available | Positive | 4840936 - 4842378 | 51608.4 |
| glycosyltransferase | BJD13_RS23215 | Not Available | Negative | 4842734 - 4844836 | 76595.9 |
| penicillin-binding protein 1b | BJD13_RS23220 | Not Available | Positive | 4845074 - 4847518 | 87867.5 |
| hypothetical protein | BJD13_RS23225 | Not Available | Positive | 4847532 - 4848056 | 18469.1 |
| atp-dependent dna helicase | BJD13_RS23230 | Not Available | Positive | 4848327 - 4850315 | 71817.9 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex dimerization subunit type 1 tsab | BJD13_RS23235 | Not Available | Positive | 4850481 - 4851200 | 24852.1 |
| nfed family protein | BJD13_RS23240 | Not Available | Positive | 4851197 - 4851553 | 13019.3 |
| nfed family protein | BJD13_RS23250 | Not Available | Positive | 4851824 - 4852108 | 9933.73 |
| hypothetical protein | BJD13_RS23255 | Not Available | Negative | 4853003 - 4854628 | 59527.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
