Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent rna helicase hrpa | BJD13_RS23145 | Not Available | Positive | 4824070 - 4828191 | 152422.0 |
| tonb-dependent receptor | BJD13_RS23150 | Not Available | Negative | 4828407 - 4831043 | 95550.0 |
| glucokinase family protein | BJD13_RS23155 | Not Available | Negative | 4831146 - 4832180 | 36621.2 |
| phopq-activated pathogenicity-related family protein | BJD13_RS23160 | Not Available | Negative | 4832473 - 4833987 | 54871.4 |
| hypothetical protein | BJD13_RS23170 | Not Available | Negative | 4834416 - 4834928 | 18511.4 |
| pyrroloquinoline quinone biosynthesis protein pqqe | BJD13_RS23175 | Not Available | Negative | 4834990 - 4836108 | 40685.7 |
| pyrroloquinoline quinone biosynthesis peptide chaperone pqqd | BJD13_RS23180 | Not Available | Negative | 4836105 - 4836383 | 10340.3 |
| pyrroloquinoline-quinone synthase pqqc | BJD13_RS23185 | Not Available | Negative | 4836380 - 4837132 | 28074.6 |
| pyrroloquinoline quinone biosynthesis protein pqqb | BJD13_RS23190 | Not Available | Negative | 4837129 - 4838028 | 32452.8 |
| pyrroloquinoline quinone precursor peptide pqqa | BJD13_RS23195 | Not Available | Negative | 4838110 - 4838190 | 2988.63 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
