Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein tolr | BJD13_RS23035 | Not Available | Positive | 4804552 - 4805001 | 15746.6 |
| cell envelope integrity protein tola | BJD13_RS23040 | Not Available | Positive | 4804991 - 4806031 | 37525.2 |
| tol-pal system beta propeller repeat protein tolb | BJD13_RS23045 | Not Available | Positive | 4806220 - 4807539 | 47058.8 |
| peptidoglycan-associated lipoprotein pal | BJD13_RS23050 | Not Available | Positive | 4807597 - 4808115 | 18495.7 |
| tol-pal system protein ybgf | BJD13_RS23055 | Not Available | Positive | 4808122 - 4808940 | 29558.4 |
| 7-carboxy-7-deazaguanine synthase quee | BJD13_RS23060 | Not Available | Positive | 4808982 - 4809665 | 25291.3 |
| Trna-lys | Not Available | Not Available | Positive | 4809916 - 4809991 | Not Available |
| 7-cyano-7-deazaguanine synthase quec | BJD13_RS23070 | Not Available | Negative | 4810040 - 4810714 | 23264.7 |
| sensor histidine kinase | BJD13_RS23075 | Not Available | Positive | 4810990 - 4811997 | 37643.8 |
| response regulator | BJD13_RS23080 | Not Available | Positive | 4811994 - 4812353 | 13063.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
