Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transposase | BJD13_RS22985 | Not Available | Negative | 4795411 - 4795677 | 10092.3 |
| alpha/beta hydrolase | BJD13_RS22990 | Not Available | Positive | 4795907 - 4796575 | 23573.6 |
| yebc/pmpr family dna-binding transcriptional regulator | BJD13_RS22995 | Not Available | Positive | 4796665 - 4797393 | 25675.2 |
| crossover junction endodeoxyribonuclease ruvc | BJD13_RS23000 | Not Available | Positive | 4797524 - 4798048 | 18692.0 |
| holliday junction branch migration protein ruva | BJD13_RS23005 | Not Available | Positive | 4798206 - 4798790 | 20863.2 |
| potassium transporter kup | BJD13_RS23010 | Not Available | Positive | 4798987 - 4800891 | 68984.4 |
| smi1/knr4 family protein | BJD13_RS23015 | Not Available | Positive | 4800894 - 4802012 | 41388.6 |
| holliday junction branch migration dna helicase ruvb | BJD13_RS23020 | Not Available | Positive | 4802052 - 4803092 | 37990.1 |
| tol-pal system-associated acyl-coa thioesterase | BJD13_RS23025 | Not Available | Positive | 4803145 - 4803603 | 17408.8 |
| protein tolq | BJD13_RS23030 | Not Available | Positive | 4803615 - 4804394 | 28482.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
