Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nfed family protein | BJD13_RS22930 | Not Available | Positive | 4779418 - 4780365 | 34155.8 |
| phosphocholine-specific phospholipase c | BJD13_RS22935 | Not Available | Negative | 4780582 - 4782729 | 77587.1 |
| tonb-dependent receptor domain-containing protein | BJD13_RS22940 | Not Available | Negative | 4782804 - 4785260 | 88663.0 |
| mfs transporter | BJD13_RS22950 | Not Available | Negative | 4785675 - 4786913 | 43792.0 |
| fmdb family zinc ribbon protein | BJD13_RS22955 | Not Available | Positive | 4787389 - 4787682 | 10126.8 |
| duf3011 domain-containing protein | BJD13_RS22960 | Not Available | Negative | 4788152 - 4788919 | 28042.5 |
| aspartate--trna ligase | BJD13_RS22965 | Not Available | Positive | 4789077 - 4790843 | 65007.8 |
| gnat family n-acetyltransferase | BJD13_RS22970 | Not Available | Positive | 4791307 - 4791840 | 20416.2 |
| ricin-type beta-trefoil lectin domain protein | BJD13_RS22975 | Not Available | Positive | 4792297 - 4794483 | 77975.9 |
| transposase | BJD13_RS25100 | Not Available | Negative | 4794938 - 4795138 | 7257.52 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
