Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ybal family putative k(+) efflux transporter | BJD13_RS22870 | Not Available | Negative | 4762485 - 4764182 | 59222.4 |
| cytochrome p450 | BJD13_RS22880 | Not Available | Positive | 4764614 - 4765807 | 43984.2 |
| tonb-dependent receptor plug domain-containing protein | BJD13_RS22885 | Not Available | Negative | 4766007 - 4768406 | 85760.1 |
| tonb-dependent receptor plug domain-containing protein | BJD13_RS22890 | Not Available | Negative | 4768748 - 4771135 | 85043.5 |
| voc family protein | BJD13_RS22895 | Not Available | Negative | 4771409 - 4771834 | 15446.2 |
| tonb-dependent receptor plug domain-containing protein | BJD13_RS22905 | Not Available | Negative | 4772258 - 4774630 | 83973.0 |
| abc-f family atp-binding cassette domain-containing protein | BJD13_RS22910 | Not Available | Positive | 4774810 - 4776726 | 69673.7 |
| ycxb family protein | BJD13_RS22915 | Not Available | Positive | 4776919 - 4777419 | 18915.2 |
| lysr family transcriptional regulator ampr | BJD13_RS22920 | Not Available | Negative | 4777435 - 4778310 | 31825.3 |
| class a beta-lactamase | BJD13_RS22925 | Not Available | Positive | 4778411 - 4779304 | 31970.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
