Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iii plp-dependent enzyme | BJD13_RS22820 | Not Available | Negative | 4749209 - 4750405 | 42916.6 |
| iuca/iucc family protein | BJD13_RS22825 | Not Available | Negative | 4750402 - 4752171 | 65144.0 |
| mfs transporter | BJD13_RS22830 | Not Available | Negative | 4752149 - 4753345 | 41588.2 |
| iuca/iucc family siderophore biosynthesis protein | BJD13_RS22835 | Not Available | Negative | 4753342 - 4755144 | 66554.7 |
| atp-grasp domain-containing protein | BJD13_RS22840 | Not Available | Negative | 4755141 - 4756367 | 44998.0 |
| tonb-dependent receptor family protein | BJD13_RS22845 | Not Available | Negative | 4756604 - 4758745 | 79249.0 |
| hpch/hpai aldolase family protein | BJD13_RS22850 | Not Available | Negative | 4758746 - 4759507 | 26881.9 |
| hypothetical protein | BJD13_RS22855 | Not Available | Positive | 4759851 - 4760483 | 23831.8 |
| duf6792 domain-containing protein | BJD13_RS22860 | Not Available | Positive | 4760425 - 4761750 | 48261.6 |
| hypothetical protein | BJD13_RS22865 | Not Available | Positive | 4761780 - 4762349 | 21138.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
