Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| adenosylcobinamide-phosphate synthase cbib | BJD13_RS22775 | Not Available | Positive | 4739913 - 4740827 | 32080.1 |
| threonine-phosphate decarboxylase cobd | BJD13_RS22780 | Not Available | Positive | 4740921 - 4741904 | 35183.3 |
| cobyric acid synthase | BJD13_RS22785 | Not Available | Positive | 4741901 - 4743373 | 51718.3 |
| bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | BJD13_RS22790 | Not Available | Positive | 4743361 - 4743885 | 18840.9 |
| nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | BJD13_RS22795 | Not Available | Positive | 4743878 - 4744924 | 35941.3 |
| histidine phosphatase family protein | BJD13_RS22800 | Not Available | Positive | 4744921 - 4745535 | 22089.2 |
| adenosylcobinamide-gdp ribazoletransferase | BJD13_RS22805 | Not Available | Positive | 4745532 - 4746266 | 24884.3 |
| hypothetical protein | BJD13_RS22810 | Not Available | Positive | 4746696 - 4747832 | 40693.6 |
| hypothetical protein | BJD13_RS22815 | Not Available | Negative | 4747842 - 4748408 | 20334.6 |
| nfed family protein | BJD13_RS25500 | Not Available | Positive | 4748881 - 4749002 | 4591.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
